Explore pathogens by filtering data and linking to information at the BRCs covering pathogens.
Access our collection of Pathogen-related Genome resources.
View our Pathogen-related Protein-Protein Interaction Data.
The RNA-Seq Pipeline based on
the Galaxy platform created at Penn State and Emory University and modified by VBI's Pathogen Portal Team, allows you to:
-Align your Illumina fastQ reads (gzipped fastQ files accepted) against any sequenced genome from
-Align your Illumina fastQ reads (gzipped fastQ files accepted) against reference genomes for
-View a list of supported genomes.
-Estimate Gene Expression Values and obtain BAM files for the resulting alignments and FPKM expression values for annotated genes and novel transcripts.