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 Access our collection of Pathogen-related Genome resources.
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 View our Pathogen-related Protein-Protein Interaction Data.
 Analyze RNA-Seq Pipeline
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The RNA-Seq Pipeline based on the Galaxy platform created at Penn State and Emory University and modified by VBI's Pathogen Portal Team, allows you to:

-Align your Illumina fastQ reads (gzipped fastQ files accepted) against any sequenced genome from
EuPathDB,
PATRIC,
and VectorBase.

-Align your Illumina fastQ reads (gzipped fastQ files accepted) against reference genomes for
Homo sapiens Danio rerio
Mus musculus Saccharomyces cerevisiae
Rattus norvegicus

-View a list of supported genomes.

-Estimate Gene Expression Values and obtain BAM files for the resulting alignments and FPKM expression values for annotated genes and novel transcripts.
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